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Rating Stats for

Johannes Köster

Rating
1507.37 (105,743rd)

Reputation
1,316 (122,271st)

Page: 1 2

Title	Δ
Adding auto-QC to Snakemake pipeline to filter out samples with bad...	0.00
Can snakemake create job error and output files automatically on a...	0.00
segmentation fault and memory not mapped when loading the rtracklay...	-0.13
Parallel execution of a snakemake rule with same input and a range...	0.00
Using Snakemake with Azure Kubernetes Services	0.00
How to use list in Snakemake Tabular configuration, for describing...	-3.96
Snakemake: using regex in rule run	0.00
Snakemake: how maintain a snakelike instance value across multiple...	+3.80
awk command fails in snakemake --use-singularity	-0.11
Conda Snakemake installation issue: UnsatisfiableError	-0.14
Snakemake with multiples Rule All	0.00
Snakemake: how to best discern between the various types of Node fa...	0.00
snakemake config PATH ENVIRONMENT	0.00
Implementing dynamic rule precedence based on number of inputs poss...	0.00
Best way to specify local inputs and S3 inputs without modifying ru...	0.00
Snakemake: unknown output/input files after splitting by chromosome	0.00
--immediate-submit {dependencies} string contains script paths, not...	0.00
Varying (known) number of outputs in Snakemake	0.00
MissingRuleException in Snakemake after code changes	0.00
Snakemake: Pull sample-specific information from config sheet	-4.13
Snakemake memory limiting	0.00
Determining in Snakefile whether running in cluster mode or not	-0.14
How to keep the snakemake shell file while running in cluster	-0.50
How to match job id to a rule shell script	0.00
How to overwrite a parameter from the configfile that is not at the...	0.00
Snakemake on cluster, avoid submitting one rule as a job	0.00
Using Snakefile variables in config file [snakemake]	0.00
Trigger snakemake rule-execution upon reference db update	0.00
How to get the conda environment path inside a rule?	0.00
How can Snakemake be made to update files in a hierarchical rule-ba...	-0.15
Is snakemake the right tool to use for handling output mediated wor...	0.00
time latency for snakemake	0.00
Handling SIGPIPE error in snakemake	+3.94
Snakemake MissingOutputException latency-wait ignored	0.00
How to perform simple string operations in snakemake output	-4.13
snakemake how to encode pair analisys	0.00
How to translate a simple target pattern rule to snakemake?	+3.88
Snakemake: Generic input function for different file locations	0.00
Snakemake: referencing output beyond parent in recursive sub-workfl...	0.00
snakemake understand yaml interpretation on alignment command	0.00
Can snakemake config parameter values be strings with {<name>...	+3.87
Snakemake: Wrapper command logging	0.00
'No values given for wildcard error' in snakemake	0.00
Snakemake: sub-workflow error when executing in LSF cluster	0.00
Error: "attribute "m_numa_nodes" is not a integer va...	+4.03
Subprocess: Can't convert '_io.BufferedReader' object t...	0.00
Snakemake: Random order of wildcards in wildcards list	0.00
How to get the working directory path?	0.00
Globally load R libraries in Snakemake	0.00
Generating a parameterized number of outputfiles for a snakemake rule	0.00